MolNFT v1 · #62740 · protein
Fmo protein from prosthecochloris aestuarii 2K at 1.3A resolution
3EOJ · Bacteriochlorophyll a protein: “Fmo protein from prosthecochloris aestuarii 2K at 1.3A resolution”. X-ray diffraction, 3 ligands (BCL, NA, NH4), 3 pockets (best druggability 0.81). MolNFT v1 #62740 on GenesisL1: 3D structure…
- PDB
- 3EOJ
- Type
- protein
- Length
- 358 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriochlorophyll a protein
- UniProt
- P11741
- Ligands
- BCL, NA, NH4
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bacteriochlorophyll a protein | protein | 358 | 18% helix, 48% strand | P11741 |
Ligands and binding sites
- BCL · Bacteriochlorophyll A · ligand · 8 copies · chains A
- NA · Sodium ion · metal · chains A
- NH4 · Ammonium ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 15 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1083 | 0.81 | 0.82 | 105 | BCL |
| 2 | 241 | 0.67 | 0.83 | 22 | BCL |
| 3 | 231 | 0.54 | 0.77 | 32 | EDO |
Modifications
Observed in the structure: 3 covalent (covalent ligand, additive adduct).
Compared structures
- 3EOJ · Fmo protein from Prosthecochloris Aestuarii 2K AT 1.3A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P11741 · AlphaFold monomer V2.0 prediction for bacteriochlorophyll a protein (P11741) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11741
- Elsewhere: RCSB PDB 3EOJ · PDBe 3EOJ · UniProt P11741
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.