MolNFT v1 · #62727 · protein

Crystal structure of protein of unknown function (DUF1255) (AFE_2634) from acidithiobacillus ferrooxidans NCIB8455 at 0.97 a resolution

3EO6: “Crystal structure of protein of unknown function (DUF1255) (AFE_2634) from acidithiobacillus ferrooxidans…”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.31). MolNFT v1 #62727 on GenesisL1: 3D structure, binding…

PDB: 3EO6
Type: protein
Length: 212 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein of unknown function (DUF1255)
Ligands: MG
Pockets: 2 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 62% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein of unknown function (DUF1255)	protein	106	3% helix, 62% strand	—

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains B
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.31	0.76	15	empty
2	60	0.29	0.74	17	empty

Interfaces

1 interface between chains.

A–B · 1344 Å² buried · 27 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

3EO6 · Crystal structure of protein of unknown function (DUF1255) (AFE_2634) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3EO6 · PDBe 3EO6

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