MolNFT v1 · #62684 · protein
Crystal structure of plasmodium vivax pnp with sulphate
3EMV · Uridine phosphorylase, putative: “Crystal structure of plasmodium vivax pnp with sulphate”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.65). MolNFT v1 #62684 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3EMV
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uridine phosphorylase, putative
- EC
- 2.4.2.1
- UniProt
- A5K9M4
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uridine phosphorylase, putative (EC 2.4.2.1) | protein | 246 | 30% helix, 29% strand | A5K9M4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 332 | 0.65 | 0.80 | 44 | SO4 |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5K9M4
- Elsewhere: RCSB PDB 3EMV · PDBe 3EMV · UniProt A5K9M4
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