MolNFT v1 · #62654 · protein

Crystal structure of full-length yeast PML1P

3ELV · Pre-mRNA leakage protein 1: “Crystal structure of full-length yeast PML1P”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.50). MolNFT v1 #62654 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3ELV
Type: protein
Length: 289 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pre-mRNA leakage protein 1
UniProt: Q07930
Ligands: SO4
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pre-mRNA leakage protein 1	protein	145	11% helix, 37% strand	Q07930
B	Pre-mRNA leakage protein 1	protein	144	9% helix, 35% strand	Q07930

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	190	0.50	0.76	30	empty

Interfaces

1 interface between chains.

A–B · 710 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

3ELV · Crystal Structure of Full-Length Yeast Pml1p · the same entry in another collection · chain A against A, TM-score 1.00
Q07930 · AlphaFold monomer V2.0 prediction for pre-mRNA leakage protein 1 (Q07930) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07930
Elsewhere: RCSB PDB 3ELV · PDBe 3ELV · UniProt Q07930

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