MolNFT v1 · #62592 · protein
Crystal structure of nitroreductase with bound FMN (YP_211706.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution
3EK3: “Crystal structure of nitroreductase with bound FMN (YP_211706.1) from bacteroides fragilis nctc 9343 at 1.70…”. X-ray diffraction, 2 ligands (FMN, UNL). MolNFT v1 #62592 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3EK3
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitroreductase
- UniProt
- Q5LDN3
- Ligands
- FMN, UNL
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitroreductase | protein | 187 | 40% helix, 16% strand | Q5LDN3 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- UNL · Unknown ligand · ligand · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3EK3 · Crystal structure of Nitroreductase with Bound FMN (YP_211706.1) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LDN3
- Elsewhere: RCSB PDB 3EK3 · PDBe 3EK3 · UniProt Q5LDN3
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