MolNFT v1 · #62572 · protein
Crystal structure of staphylococcal nuclease variant DELTA+PHS L36K at cryogenic temperature
3EJI · Thermonuclease: “Crystal structure of staphylococcal nuclease variant DELTA+PHS L36K at cryogenic temperature”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.38). MolNFT v1 #62572 on GenesisL1: 3D structure…
- PDB
- 3EJI
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermonuclease
- EC
- 3.1.31.1
- UniProt
- Q6GIK1
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermonuclease (EC 3.1.31.1) | protein | 130 | 28% helix, 31% strand | Q6GIK1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.38 | 0.78 | 15 | empty |
Compared structures
- 3EJI · Crystal structure of Staphylococcal nuclease variant Delta+PHS L36K at cryogenic… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6GIK1 · AlphaFold monomer V2.0 prediction for thermonuclease (Q6GIK1) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6GIK1
- Elsewhere: RCSB PDB 3EJI · PDBe 3EJI · UniProt Q6GIK1
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