MolNFT v1 · #62432 · protein

Crystal structure of yaet periplasmic domain

3EFC · Outer membrane protein assembly factor yaet: “Crystal structure of yaet periplasmic domain”. X-ray diffraction, 1 pocket (best druggability 0.49). MolNFT v1 #62432 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3EFC
Type: protein
Length: 327 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein assembly factor yaet
UniProt: P0A940
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein assembly factor yaet	protein	327	28% helix, 26% strand	P0A940

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	190	0.49	0.76	31	empty

Compared structures

3EFC · Crystal Structure of YaeT periplasmic domain · the same entry in another collection · chain A against A, TM-score 1.00
P0A940 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bama (P0A940) · a predicted model of the same protein · chain A against A, TM-score 0.60

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A940
Elsewhere: RCSB PDB 3EFC · PDBe 3EFC · UniProt P0A940

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.