MolNFT v1 · #62221 · protein
Crystal structure of a gaf domain containing protein that belongs to pfam DUF484 family (PA5279) from pseudomonas aeruginosa at 2.43 a resolution
3E98 · Gaf domain of unknown function: “Crystal structure of a gaf domain containing protein that belongs to pfam DUF484 family (PA5279) from…”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #62221 on GenesisL1: 3D…
- PDB
- 3E98
- Type
- protein
- Length
- 352 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gaf domain of unknown function
- UniProt
- Q51565
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gaf domain of unknown function | protein | 178 | 60% helix, 15% strand | Q51565 |
| B | Gaf domain of unknown function | protein | 174 | 57% helix, 17% strand | Q51565 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 180 | 0.65 | 0.85 | 34 | EDO |
| 2 | 120 | 0.43 | 0.77 | 26 | empty |
| 3 | 56 | 0.33 | 0.77 | 16 | empty |
| 4 | 79 | 0.31 | 0.73 | 17 | EDO |
Interfaces
1 interface between chains.
- A–B · 1438 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3E98 · CRYSTAL STRUCTURE OF a GAF domain containing protein that belongs to Pfam DUF484 family… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51565
- Elsewhere: RCSB PDB 3E98 · PDBe 3E98 · UniProt Q51565
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