MolNFT v1 · #62209 · protein

Crystal structure of epiphyas postvittana takeout 1

3E8W · Takeout-like protein 1: “Crystal structure of epiphyas postvittana takeout 1”. X-ray diffraction, 1 ligand (UQ8), 1 pocket (best druggability 0.90). MolNFT v1 #62209 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3E8W
Type: protein
Length: 219 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Takeout-like protein 1
UniProt: B5ABT1
Ligands: UQ8
Pockets: 1 · best druggability 0.90

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Takeout-like protein 1	protein	219	33% helix, 46% strand	B5ABT1

Ligands and binding sites

UQ8 · Ubiquinone-8 · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	537	0.90	0.96	66	UQ8

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3E8W · Crystal Structure of Epiphyas postvittana Takeout 1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5ABT1
Elsewhere: RCSB PDB 3E8W · PDBe 3E8W · UniProt B5ABT1

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