MolNFT v1 · #61998 · protein
Crystal structure of mouse kynurenine aminotransferase III, plp-bound form
3E2F · Kynurenine-oxoglutarate transaminase 3: “Crystal structure of mouse kynurenine aminotransferase III, plp-bound form”. X-ray diffraction, 5 pockets (best druggability 0.75). MolNFT v1 #61998 on GenesisL1: 3D structure, binding sites…
- PDB
- 3E2F
- Type
- protein
- Length
- 820 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kynurenine-oxoglutarate transaminase 3
- EC
- 2.6.1.7, 4.4.1.13
- UniProt
- Q71RI9
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Kynurenine-oxoglutarate transaminase 3 (EC 2.6.1.7, 4.4.1.13) | protein | 410 | 44% helix, 16% strand | Q71RI9 |
Ligands and binding sites
- GOL · Glycerol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 494 | 0.75 | 0.83 | 62 | GOL |
| 2 | 592 | 0.73 | 0.81 | 60 | GOL |
| 3 | 105 | 0.37 | 0.74 | 18 | GOL |
| 4 | 70 | 0.34 | 0.76 | 16 | empty |
| 5 | 89 | 0.33 | 0.73 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 2857 Ų buried · 52 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (cofactor).
Compared structures
- 3E2F · Crystal structure of mouse kynurenine aminotransferase III, PLP-bound form · the same entry in another collection · chain A against A, TM-score 1.00
- Q71RI9 · AlphaFold monomer V2.0 prediction for kynurenine--oxoglutarate transaminase 3 (Q71RI9) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q71RI9
- Elsewhere: RCSB PDB 3E2F · PDBe 3E2F · UniProt Q71RI9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.