MolNFT v1 · #61937 · protein
Crystal structure of C-termianl domain of N-acetylglutamate synthase from vibrio parahaemolyticus
3E0K · Amino-acid acetyltransferase: “Crystal structure of C-termianl domain of N-acetylglutamate synthase from vibrio parahaemolyticus”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.57). MolNFT v1 #61937 on GenesisL1…
- PDB
- 3E0K
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amino-acid acetyltransferase
- EC
- 2.3.1.1
- UniProt
- Q87M87
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Amino-acid acetyltransferase (EC 2.3.1.1) | protein | 146 | 43% helix, 23% strand | Q87M87 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 246 | 0.57 | 0.78 | 31 | SO4 |
| 2 | 208 | 0.57 | 0.79 | 27 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3E0K · Crystal structure of C-termianl domain of N-acetylglutamate synthase from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00
- Q87M87 · AlphaFold monomer V2.0 prediction for amino-acid acetyltransferase (Q87M87) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87M87
- Elsewhere: RCSB PDB 3E0K · PDBe 3E0K · UniProt Q87M87
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.