MolNFT v1 · #61865 · protein
Crystal structure of AED7 potassium bromide soak
3DY9 · D7 protein: “Crystal structure of AED7 potassium bromide soak”. X-ray diffraction, 1 ligand (BR), 3 pockets (best druggability 0.72). MolNFT v1 #61865 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DY9
- Type
- protein
- Length
- 298 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D7 protein
- UniProt
- P18153
- Ligands
- BR
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D7 protein | protein | 298 | 58% helix, 3% strand | P18153 |
Ligands and binding sites
- BR · Bromide ion · ion · 8 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 310 | 0.72 | 0.84 | 43 | BR, GOL |
| 2 | 109 | 0.57 | 0.84 | 17 | TRS, GOL |
| 3 | 304 | 0.56 | 0.76 | 31 | GOL |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18153
- Elsewhere: RCSB PDB 3DY9 · PDBe 3DY9 · UniProt P18153
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