MolNFT v1 · #61820 · protein
Crystal structure of the bromodomain of human crebbp
3DWY · Creb-binding protein: “Crystal structure of the bromodomain of human crebbp”. X-ray diffraction, 6 pockets (best druggability 0.46). MolNFT v1 #61820 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DWY
- Type
- protein
- Length
- 226 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Creb-binding protein
- EC
- 2.3.1.48
- UniProt
- Q92793
- Pockets
- 6 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Creb-binding protein (EC 2.3.1.48) | protein | 114 | 68% helix, 0% strand | Q92793 |
| B | Creb-binding protein (EC 2.3.1.48) | protein | 112 | 70% helix, 0% strand | Q92793 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.46 | 0.82 | 17 | empty |
| 2 | 70 | 0.45 | 0.81 | 17 | empty |
| 3 | 110 | 0.42 | 0.77 | 18 | empty |
| 4 | 50 | 0.34 | 0.79 | 13 | empty |
| 5 | 50 | 0.29 | 0.75 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 456 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92793
- Elsewhere: RCSB PDB 3DWY · PDBe 3DWY · UniProt Q92793
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