MolNFT v1 · #61569 · protein
HIV-1 capsid C-terminal domain mutant (L211S)
3DPH · HIV-1 capsid protein: “HIV-1 capsid C-terminal domain mutant (L211S)”. X-ray diffraction, 1 pocket (best druggability 0.31). MolNFT v1 #61569 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DPH
- Type
- protein
- Length
- 158 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 capsid protein
- UniProt
- Q72497
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 2 distinct chains · 61% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HIV-1 capsid protein | protein | 78 | 62% helix, 0% strand | Q72497 |
| B | HIV-1 capsid protein | protein | 80 | 61% helix, 0% strand | Q72497 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.31 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 512 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3DPH · HIV-1 capsid C-terminal domain mutant (L211S) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 3DPH · PDBe 3DPH · UniProt Q72497
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