MolNFT v1 · #61559 · protein

Crystal structure of SAM-dependent methyltransferase from bacteroides vulgatus atcc 8482

3DP7: “Crystal structure of SAM-dependent methyltransferase from bacteroides vulgatus atcc 8482”. X-ray diffraction, 11 pockets (best druggability 0.75). MolNFT v1 #61559 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3DP7
Type: protein
Length: 701 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SAM-dependent methyltransferase
UniProt: A6KZ44
Pockets: 11 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 51% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SAM-dependent methyltransferase	protein	351	52% helix, 14% strand	A6KZ44
B	SAM-dependent methyltransferase	protein	350	50% helix, 16% strand	A6KZ44

Pockets

11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	507	0.75	0.83	57	empty
2	495	0.73	0.82	55	empty
3	418	0.68	0.80	49	empty
4	54	0.45	0.84	19	empty
5	73	0.42	0.80	19	empty

Interfaces

1 interface between chains.

A–B · 4015 Å² buried · 43 hydrogen bonds · protein-protein

Compared structures

3DP7 · CRYSTAL STRUCTURE OF SAM-dependent methyltransferase from Bacteroides vulgatus ATCC 8482 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6KZ44
Elsewhere: RCSB PDB 3DP7 · PDBe 3DP7 · UniProt A6KZ44

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