MolNFT v1 · #61557 · protein
Crystal structure of geobacter sulfurreducens omcf with N-terminal strep-tag II
3DP5 · Cytochrome C family protein: “Crystal structure of geobacter sulfurreducens omcf with N-terminal strep-tag II”. X-ray diffraction, 2 ligands (HEC, SO4), 1 pocket (best druggability 0.70). MolNFT v1 #61557 on GenesisL1: 3D structure…
- PDB
- 3DP5
- Type
- protein
- Length
- 99 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C family protein
- UniProt
- Q74AE4
- Ligands
- HEC, SO4
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C family protein | protein | 99 | 41% helix, 0% strand | Q74AE4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.70 | 0.86 | 28 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 3DP5 · Crystal structure of Geobacter sulfurreducens OmcF with N-terminal Strep-tag II · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q74AE4
- Elsewhere: RCSB PDB 3DP5 · PDBe 3DP5 · UniProt Q74AE4
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