MolNFT v1 · #61542 · protein
Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis
3DON: “Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis”. X-ray diffraction, 1 pocket (best druggability 0.63). MolNFT v1 #61542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DON
- Type
- protein
- Length
- 264 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Shikimate dehydrogenase
- EC
- 1.1.1.25
- UniProt
- Q5HNV1
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Shikimate dehydrogenase (EC 1.1.1.25) | protein | 264 | 41% helix, 18% strand | Q5HNV1 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.63 | 0.77 | 40 | GOL |
Compared structures
- 3DON · Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis · the same entry in another collection · chain A against A, TM-score 1.00
- Q5HNV1 · AlphaFold monomer V2.0 prediction for shikimate dehydrogenase (NADP(+)) (Q5HNV1) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HNV1
- Elsewhere: RCSB PDB 3DON · PDBe 3DON · UniProt Q5HNV1
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