MolNFT v1 · #61467 · protein
T. thermophilus 16S rRNA N2 G1207 methyltransferase (rsmc) in complex with adohcy
3DMG · Probable ribosomal RNA small subunit methyltransferase: “T. thermophilus 16S rRNA N2 G1207 methyltransferase (rsmc) in complex with adohcy”. X-ray diffraction, 2 ligands (SAH, SO4), 2 pockets (best druggability 0.73). MolNFT v1…
- PDB
- 3DMG
- Type
- protein
- Length
- 371 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ribosomal RNA small subunit methyltransferase
- EC
- 2.1.1.-
- UniProt
- Q5SKW0
- Ligands
- SAH, SO4
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ribosomal RNA small subunit methyltransferase (EC 2.1.1.-) | protein | 371 | 31% helix, 31% strand | Q5SKW0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 656 | 0.73 | 0.80 | 63 | SO4, SAH |
| 2 | 60 | 0.39 | 0.79 | 11 | empty |
Compared structures
- 3DMG · T. Thermophilus 16S rRNA N2 G1207 methyltransferase (RsmC) in complex with AdoHcy · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SKW0
- Elsewhere: RCSB PDB 3DMG · PDBe 3DMG · UniProt Q5SKW0
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