MolNFT v1 · #61463 · protein

Crystal structure of a NTF2-like protein (AVA_2261) from anabaena variabilis atcc 29413 at 1.65 a resolution

3DMC: “Crystal structure of a NTF2-like protein (AVA_2261) from anabaena variabilis atcc 29413 at 1.65 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.62). MolNFT v1 #61463 on GenesisL1: 3D structure, binding sites and…

PDB: 3DMC
Type: protein
Length: 268 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NTF2-like protein
UniProt: Q3MAV7
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	NTF2-like protein	protein	134	29% helix, 46% strand	Q3MAV7

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	231	0.62	0.81	29	ACT
2	226	0.60	0.80	29	ACT

Interfaces

1 interface between chains.

A–B · 1488 Å² buried · 42 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3DMC · Crystal structure of a NTF2-like protein (AVA_2261) from anabaena variabilis atcc 29413… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3MAV7
Elsewhere: RCSB PDB 3DMC · PDBe 3DMC · UniProt Q3MAV7

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