MolNFT v1 · #61461 · protein

Structures and conformations in solution of the signal recognition particle receptor from the archaeon pyrococcus furiosus

3DM9: “Structures and conformations in solution of the signal recognition particle receptor from the archaeon…”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.52). MolNFT v1 #61461 on GenesisL1: 3D structure, binding…

PDB: 3DM9
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal recognition particle receptor
UniProt: Q8U051
Ligands: PO4
Pockets: 3 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Signal recognition particle receptor	protein	305	54% helix, 15% strand	Q8U051

Ligands and binding sites

PO4 · Phosphate ion · ion · 4 copies · chains B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.52	0.88	22	empty
2	93	0.38	0.75	19	empty
3	51	0.33	0.78	14	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3DM9 · Structures and Conformations in Solution of the Signal Recognition Particle Receptor from… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8U051
Elsewhere: RCSB PDB 3DM9 · PDBe 3DM9 · UniProt Q8U051

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