MolNFT v1 · #61453 · protein
Maltose binding protein fusion with RACK1 from a. thaliana
3DM0 · Maltose-binding periplasmic protein fused with RACK1: “Maltose binding protein fusion with RACK1 from a. thaliana”. X-ray diffraction, 1 ligand (GLC), 7 pockets (best druggability 0.81). MolNFT v1 #61453 on GenesisL1: 3D structure…
- PDB
- 3DM0
- Type
- protein
- Length
- 675 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic protein fused with RACK1
- UniProt
- P0AEX9, O24456
- Ligands
- GLC
- Pockets
- 7 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic protein fused with RACK1 | protein | 675 | 26% helix, 35% strand | P0AEX9, O24456 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 770 | 0.81 | 0.84 | 60 | empty |
| 2 | 341 | 0.72 | 0.84 | 37 | GLC, EDO |
| 3 | 76 | 0.42 | 0.80 | 18 | empty |
| 4 | 141 | 0.40 | 0.74 | 21 | empty |
| 5 | 58 | 0.40 | 0.80 | 16 | empty |
Compared structures
- 3DM0 · Maltose Binding Protein fusion with RACK1 from A. thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- O24456 · AlphaFold monomer V2.0 prediction for receptor for activated C kinase 1A (O24456) · a predicted model of the same protein · chain A against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt O24456
- Elsewhere: RCSB PDB 3DM0 · PDBe 3DM0 · UniProt P0AEX9 · UniProt O24456
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