MolNFT v1 · #61420 · protein

Crystal structure of the Q7W9W5_BORPA protein from bordetella parapertussis. northeast structural genomics consortium target BPR208C.

3DKZ · Thioesterase superfamily protein: “Crystal structure of the Q7W9W5_BORPA protein from bordetella parapertussis. northeast structural genomics…”. X-ray diffraction, 2 pockets (best druggability 0.37). MolNFT v1 #61420 on GenesisL1…

PDB: 3DKZ
Type: protein
Length: 249 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thioesterase superfamily protein
UniProt: Q7W9W5
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 17% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thioesterase superfamily protein	protein	125	16% helix, 46% strand	Q7W9W5
B	Thioesterase superfamily protein	protein	124	18% helix, 43% strand	Q7W9W5

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	75	0.37	0.77	15	empty
2	58	0.34	0.77	15	empty

Interfaces

1 interface between chains.

A–B · 249 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3DKZ · Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7W9W5
Elsewhere: RCSB PDB 3DKZ · PDBe 3DKZ · UniProt Q7W9W5

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