MolNFT v1 · #61417 · protein

Crystal structure of dnr from pseudomonas aeruginosa.

3DKW · Dnr protein: “Crystal structure of dnr from pseudomonas aeruginosa.”. X-ray diffraction, 20 pockets (best druggability 0.86). MolNFT v1 #61417 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3DKW
Type: protein
Length: 2,270 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dnr protein
UniProt: Q51441
Pockets: 20 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J	Dnr protein	protein	227	37% helix, 18% strand	Q51441

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1042	0.86	0.87	123	empty
2	1158	0.84	0.85	136	empty
3	1200	0.81	0.82	101	empty
4	802	0.81	0.84	67	empty
5	571	0.79	0.85	47	empty

Interfaces

24 interfaces between chains.

C–D · 2269 Å² buried · 26 hydrogen bonds · protein-protein
E–F · 2243 Å² buried · 23 hydrogen bonds · protein-protein
A–B · 2106 Å² buried · 20 hydrogen bonds · protein-protein
I–J · 2076 Å² buried · 16 hydrogen bonds · protein-protein
G–H · 1971 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

3DKW · Crystal Structure of DNR from Pseudomonas aeruginosa. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q51441
Elsewhere: RCSB PDB 3DKW · PDBe 3DKW · UniProt Q51441

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.