MolNFT v1 · #6126 · protein

Crystal structure of murine olfactory marker protein

1F35: “Crystal structure of murine olfactory marker protein”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.33). MolNFT v1 #6126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1F35
Type: protein
Length: 324 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Olfactory marker protein
UniProt: Q64288
Ligands: ZN
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Olfactory marker protein	protein	162	24% helix, 37% strand	Q64288

Ligands and binding sites

ZN · Zinc ion · metal · 10 copies · chains A, B
CAC · Cacodylate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.33	0.73	25	ZN

Interfaces

1 interface between chains.

A–B · 595 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

1F35 · Crystal structure of murine olfactory marker protein · the same entry in another collection · chain A against A, TM-score 1.00
Q64288 · AlphaFold monomer V2.0 prediction for olfactory marker protein (Q64288) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q64288
Elsewhere: RCSB PDB 1F35 · PDBe 1F35 · UniProt Q64288

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