MolNFT v1 · #61248 · protein
Sirc, precorrin-2 dehydrogenase
3DFZ: “Sirc, precorrin-2 dehydrogenase”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.61). MolNFT v1 #61248 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DFZ
- Type
- protein
- Length
- 395 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Precorrin-2 dehydrogenase
- EC
- 1.3.1.76
- UniProt
- P61818
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Precorrin-2 dehydrogenase (EC 1.3.1.76) | protein | 196 | 47% helix, 18% strand | P61818 |
| B | Precorrin-2 dehydrogenase (EC 1.3.1.76) | protein | 199 | 43% helix, 20% strand | P61818 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.61 | 0.78 | 41 | empty |
| 2 | 340 | 0.54 | 0.75 | 50 | SO4 |
| 3 | 134 | 0.44 | 0.76 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2786 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61818
- Elsewhere: RCSB PDB 3DFZ · PDBe 3DFZ · UniProt P61818
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