MolNFT v1 · #61236 · protein
The crystal structure of the zinc inhibited form of teicoplanin deacetylase ORF2
3DFM · Teicoplanin pseudoaglycone deacetylase ORF2: “The crystal structure of the zinc inhibited form of teicoplanin deacetylase ORF2”. X-ray diffraction, 2 ligands (ZN, SO4), 2 pockets (best druggability 0.69). MolNFT v1 #61236 on…
- PDB
- 3DFM
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Teicoplanin pseudoaglycone deacetylase ORF2
- UniProt
- Q6ZZJ1
- Ligands
- ZN, SO4
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Teicoplanin pseudoaglycone deacetylase ORF2 | protein | 266 | 44% helix, 16% strand | Q6ZZJ1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 521 | 0.69 | 0.79 | 59 | SO4 |
| 2 | 78 | 0.32 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3DFM · The crystal structure of the zinc inhibited form of teicoplanin deacetylase Orf2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6ZZJ1
- Elsewhere: RCSB PDB 3DFM · PDBe 3DFM · UniProt Q6ZZJ1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.