MolNFT v1 · #61229 · protein

The crystal structure of teicoplanin pseudoaglycone deacetylase ORF2

3DFF · Teicoplanin pseudoaglycone deacetylases ORF2: “The crystal structure of teicoplanin pseudoaglycone deacetylase ORF2”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.69). MolNFT v1 #61229 on GenesisL1: 3D structure…

PDB: 3DFF
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Teicoplanin pseudoaglycone deacetylases ORF2
UniProt: Q6ZZJ1
Ligands: ZN
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Teicoplanin pseudoaglycone deacetylases ORF2	protein	266	43% helix, 17% strand	Q6ZZJ1

Ligands and binding sites

ZN · Zinc ion · metal · chains A
PG4 · Tetraethylene glycol · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	390	0.69	0.81	34	PG4
2	131	0.44	0.76	25	empty
3	78	0.33	0.75	17	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3DFF · The crystal structure of teicoplanin pseudoaglycone deacetylase Orf2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6ZZJ1
Elsewhere: RCSB PDB 3DFF · PDBe 3DFF · UniProt Q6ZZJ1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.