MolNFT v1 · #61223 · protein
Crystal structure of a putative ATP-grasp superfamily protein from archaeoglobus fulgidus
3DF7: “Crystal structure of a putative ATP-grasp superfamily protein from archaeoglobus fulgidus”. X-ray diffraction, 2 pockets (best druggability 0.76). MolNFT v1 #61223 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DF7
- Type
- protein
- Length
- 301 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ATP-grasp superfamily protein
- UniProt
- O29201
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ATP-grasp superfamily protein | protein | 301 | 30% helix, 31% strand | O29201 |
Ligands and binding sites
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 436 | 0.76 | 0.85 | 58 | ACT |
| 2 | 76 | 0.34 | 0.75 | 21 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3DF7 · Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29201
- Elsewhere: RCSB PDB 3DF7 · PDBe 3DF7 · UniProt O29201
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