MolNFT v1 · #61197 · protein

Crystal structure of a glycosyl hydrolases family 2 protein from bacteroides thetaiotaomicron

3DEC · Beta-galactosidase: “Crystal structure of a glycosyl hydrolases family 2 protein from bacteroides thetaiotaomicron”. X-ray diffraction, 1 ligand (K), 12 pockets (best druggability 0.67). MolNFT v1 #61197 on GenesisL1: 3D structure…

PDB: 3DEC
Type: protein
Length: 983 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-galactosidase
UniProt: Q8A2X6
Ligands: K
Pockets: 12 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-galactosidase	protein	983	15% helix, 39% strand	Q8A2X6

Ligands and binding sites

K · Potassium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.67	0.86	34	empty
2	99	0.61	0.88	26	empty
3	70	0.58	0.89	19	empty
4	78	0.56	0.87	20	empty
5	219	0.55	0.78	24	empty

Modifications

Observed in the structure: 14 modified, 1 disulfide (engineered, disulfide).

Compared structures

3DEC · Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A2X6
Elsewhere: RCSB PDB 3DEC · PDBe 3DEC · UniProt Q8A2X6

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