MolNFT v1 · #61183 · protein
Structure of lumazine protein, an optical transponder of luminescent bacteria
3DDY: “Structure of lumazine protein, an optical transponder of luminescent bacteria”. X-ray diffraction, 1 ligand (RBF), 1 pocket (best druggability 0.29). MolNFT v1 #61183 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3DDY
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lumazine protein
- UniProt
- Q06877
- Ligands
- RBF
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lumazine protein | protein | 175 | 8% helix, 47% strand | Q06877 |
Ligands and binding sites
- RBF · Riboflavin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.29 | 0.76 | 12 | empty |
Compared structures
- 3DDY · Structure of lumazine protein, an optical transponder of luminescent bacteria · the same entry in another collection · chain A against A, TM-score 1.00
- Q06877 · AlphaFold monomer V2.0 prediction for lumazine protein (Q06877) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06877
- Elsewhere: RCSB PDB 3DDY · PDBe 3DDY · UniProt Q06877
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