MolNFT v1 · #61169 · protein

Coxsackievirus B3 3DPOL RNA dependent RNA polymerase

3DDK · RNA polymerase B3 3DPOL: “Coxsackievirus B3 3DPOL RNA dependent RNA polymerase”. X-ray diffraction, 2 ligands (NA, SO4), 1 pocket (best druggability 0.71). MolNFT v1 #61169 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3DDK
Type: protein
Length: 462 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA polymerase B3 3DPOL
UniProt: Q66338
Ligands: NA, SO4
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase B3 3DPOL	protein	462	40% helix, 15% strand	Q66338

Ligands and binding sites

NA · Sodium ion · metal · 9 copies · chains A
SO4 · Sulfate ion · ion · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	778	0.71	0.77	85	NA, SO4

Compared structures

3DDK · Coxsackievirus B3 3Dpol RNA Dependent RNA Polymerase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q66338
Elsewhere: RCSB PDB 3DDK · PDBe 3DDK · UniProt Q66338

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