MolNFT v1 · #61135 · protein

Crystal structure of the thermotoga maritima spout family RNA- methyltransferase protein TM1570 in complex with S-adenosyl-L- methionine

3DCM · Uncharacterized protein TM_1570: “Crystal structure of the thermotoga maritima spout family RNA- methyltransferase protein TM1570 in complex…”. X-ray diffraction, 1 ligand (SAM), 1 pocket (best druggability 0.60). MolNFT v1 #61135…

PDB: 3DCM
Type: protein
Length: 188 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein TM_1570
UniProt: Q9X1Q6
Ligands: SAM
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Uncharacterized protein TM_1570	protein	188	39% helix, 17% strand	Q9X1Q6

Ligands and binding sites

SAM · S-adenosylmethionine · ligand · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	208	0.60	0.81	33	SAM

Compared structures

3DCM · Crystal structure of the Thermotoga maritima SPOUT family RNA-methyltransferase protein… · the same entry in another collection · chain X against X, TM-score 1.00
Q9X1Q6 · AlphaFold monomer V2.0 prediction for uncharacterized protein TM_1570 (Q9X1Q6) · a predicted model of the same protein · chain X against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1Q6
Elsewhere: RCSB PDB 3DCM · PDBe 3DCM · UniProt Q9X1Q6

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