MolNFT v1 · #61005 · protein

The crystal structure of a purr family transcriptional regulator from vibrio parahaemolyticus rimd 2210633

3D8U · Purr transcriptional regulator: “The crystal structure of a purr family transcriptional regulator from vibrio parahaemolyticus rimd 2210633”. X-ray diffraction, 6 pockets (best druggability 0.77). MolNFT v1 #61005 on GenesisL1: 3D…

PDB: 3D8U
Type: protein
Length: 534 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Purr transcriptional regulator
UniProt: Q87JL7
Pockets: 6 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Purr transcriptional regulator	protein	264	42% helix, 17% strand	Q87JL7
B	Purr transcriptional regulator	protein	270	44% helix, 17% strand	Q87JL7

Pockets

6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	313	0.77	0.89	43	empty
2	236	0.75	0.89	36	empty
3	74	0.73	0.96	19	empty
4	632	0.70	0.78	55	empty
5	330	0.66	0.81	58	empty

Interfaces

1 interface between chains.

A–B · 1326 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3D8U · The crystal structure of a PurR family transcriptional regulator from Vibrio… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q87JL7
Elsewhere: RCSB PDB 3D8U · PDBe 3D8U · UniProt Q87JL7

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