MolNFT v1 · #6088 · protein
Contribution of a buried hydrogen bond to HIV-1 envelope glycoprotein structure and function
1F23 · Transmembrane glycoprotein: “Contribution of a buried hydrogen bond to HIV-1 envelope glycoprotein structure and function”. X-ray diffraction. MolNFT v1 #6088 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1F23
- Type
- protein
- Length
- 440 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transmembrane glycoprotein
- UniProt
- Q89797
Structure
x-ray diffraction · 5 distinct chains · 87% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transmembrane glycoprotein | protein | 74 | 85% helix, 0% strand | Q89797 |
| B | Transmembrane glycoprotein | protein | 72 | 86% helix, 0% strand | Q89797 |
| C | Transmembrane glycoprotein | protein | 71 | 87% helix, 0% strand | Q89797 |
| D, E | Transmembrane glycoprotein | protein | 75 | 91% helix, 0% strand | Q89797 |
| F | Transmembrane glycoprotein | protein | 73 | 88% helix, 0% strand | Q89797 |
Interfaces
6 interfaces between chains.
- D–E · 1319 Ų buried · 12 hydrogen bonds · protein-protein
- E–F · 1257 Ų buried · 8 hydrogen bonds · protein-protein
- D–F · 1232 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 1208 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 1186 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 1F23 · Contribution of a buried hydrogen bond to HIV-1 envelope glycoprotein structure and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89797
- Elsewhere: RCSB PDB 1F23 · PDBe 1F23 · UniProt Q89797
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