MolNFT v1 · #60819 · protein
The crystal structure of the tail protein from neisseria meningitidis MC58
3D37 · Tail protein, 43 kda: “The crystal structure of the tail protein from neisseria meningitidis MC58”. X-ray diffraction, 1 ligand (CL), 9 pockets (best druggability 0.73). MolNFT v1 #60819 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3D37
- Type
- protein
- Length
- 642 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail protein, 43 kda
- UniProt
- Q9JZC8
- Ligands
- CL
- Pockets
- 9 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tail protein, 43 kda | protein | 326 | 13% helix, 43% strand | Q9JZC8 |
| B | Tail protein, 43 kda | protein | 316 | 14% helix, 41% strand | Q9JZC8 |
Ligands and binding sites
- CL · Chloride ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 853 | 0.73 | 0.78 | 82 | CL |
| 2 | 135 | 0.57 | 0.83 | 30 | CL |
| 3 | 231 | 0.52 | 0.76 | 32 | empty |
| 4 | 113 | 0.45 | 0.78 | 26 | empty |
| 5 | 123 | 0.43 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 626 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3D37 · The crystal structure of the tail protein from Neisseria meningitidis MC58 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JZC8
- Elsewhere: RCSB PDB 3D37 · PDBe 3D37 · UniProt Q9JZC8
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