MolNFT v1 · #60769 · protein
Structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 300 mm
3D1O · Myo-inositol hexaphosphate phosphohydrolase: “Structure of the ptp-like phytase expressed by selenomonas ruminantium at an ionic strength of 300 mm”. X-ray diffraction, 1 ligand (CL), 6 pockets (best druggability 0.62). MolNFT v1…
- PDB
- 3D1O
- Type
- protein
- Length
- 626 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myo-inositol hexaphosphate phosphohydrolase
- UniProt
- Q7WUJ1
- Ligands
- CL
- Pockets
- 6 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Myo-inositol hexaphosphate phosphohydrolase | protein | 313 | 40% helix, 18% strand | Q7WUJ1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 397 | 0.62 | 0.77 | 39 | empty |
| 2 | 332 | 0.58 | 0.76 | 49 | GOL |
| 3 | 161 | 0.52 | 0.79 | 33 | empty |
| 4 | 163 | 0.52 | 0.79 | 35 | empty |
| 5 | 196 | 0.49 | 0.76 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 664 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3D1O · Structure of the PTP-Like Phytase Expressed by Selenomonas Ruminantium at an Ionic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WUJ1
- Elsewhere: RCSB PDB 3D1O · PDBe 3D1O · UniProt Q7WUJ1
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