MolNFT v1 · #60354 · protein
Cytochrome C from rhodothermus marinus
3CP5: “Cytochrome C from rhodothermus marinus”. X-ray diffraction, 2 ligands (HEC, SO4), 1 pocket (best druggability 0.76). MolNFT v1 #60354 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3CP5
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C
- UniProt
- B3FQS5
- Ligands
- HEC, SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C | protein | 116 | 59% helix, 0% strand | B3FQS5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.76 | 0.90 | 31 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 3CP5 · Cytochrome c from rhodothermus marinus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3FQS5
- Elsewhere: RCSB PDB 3CP5 · PDBe 3CP5 · UniProt B3FQS5
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