MolNFT v1 · #60260 · protein

Crystal structure of putative beta-galactosidase from bacteroides fragilis

3CMG: “Crystal structure of putative beta-galactosidase from bacteroides fragilis”. X-ray diffraction, 2 ligands (PO4, CL), 8 pockets (best druggability 0.64). MolNFT v1 #60260 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3CMG
Type: protein
Length: 661 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative beta-galactosidase
UniProt: Q5LIC7
Ligands: PO4, CL
Pockets: 8 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative beta-galactosidase	protein	661	16% helix, 38% strand	Q5LIC7

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
CL · Chloride ion · ion · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	387	0.64	0.79	45	empty
2	168	0.55	0.80	27	PO4
3	161	0.51	0.78	30	empty
4	126	0.50	0.80	21	empty
5	58	0.42	0.82	16	empty

Compared structures

3CMG · Crystal structure of putative beta-galactosidase from Bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LIC7
Elsewhere: RCSB PDB 3CMG · PDBe 3CMG · UniProt Q5LIC7

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