MolNFT v1 · #60246 · protein
Crystal structure of ssga-like sporulation-specific cell division protein (YP_290167.1) from thermobifida fusca yx-ER1 at 2.60 a resolution
3CM1: “Crystal structure of ssga-like sporulation-specific cell division protein (YP_290167.1) from thermobifida…”. X-ray diffraction, 2 pockets (best druggability 0.83). MolNFT v1 #60246 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3CM1
- Type
- protein
- Length
- 384 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ssga-like sporulation-specific cell division protein
- UniProt
- Q47N25
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · 3 distinct chains · 27% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ssga-like sporulation-specific cell division protein | protein | 137 | 24% helix, 43% strand | Q47N25 |
| B | Ssga-like sporulation-specific cell division protein | protein | 121 | 29% helix, 44% strand | Q47N25 |
| C | Ssga-like sporulation-specific cell division protein | protein | 126 | 27% helix, 40% strand | Q47N25 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 932 | 0.83 | 0.84 | 85 | empty |
| 2 | 59 | 0.72 | 0.97 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–B · 822 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 818 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 800 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3CM1 · Crystal structure of SsgA-like sporulation-specific cell division protein (YP_290167.1)… · the same entry in another collection · chain A against A, TM-score 1.00
- Q47N25 · AlphaFold monomer V2.0 prediction for sporulation-specific cell division protein ssgb… · a predicted model of the same protein · chain C against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47N25
- Elsewhere: RCSB PDB 3CM1 · PDBe 3CM1 · UniProt Q47N25
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