MolNFT v1 · #60166 · protein

Crystal structure of an uncharacterized amidohydrolase CAC3332 from clostridium acetobutylicum

3CJP · Predicted amidohydrolase, dihydroorotase family: “Crystal structure of an uncharacterized amidohydrolase CAC3332 from clostridium acetobutylicum”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.85). MolNFT v1…

PDB: 3CJP
Type: protein
Length: 524 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Predicted amidohydrolase, dihydroorotase family
UniProt: Q97DY3
Ligands: ZN
Pockets: 3 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Predicted amidohydrolase, dihydroorotase family	protein	262	53% helix, 13% strand	Q97DY3

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	758	0.85	0.88	104	empty
2	240	0.52	0.76	31	empty
3	223	0.51	0.76	29	empty

Interfaces

1 interface between chains.

A–B · 1425 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

3CJP · Crystal structure of an uncharacterized amidohydrolase CAC3332 from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97DY3
Elsewhere: RCSB PDB 3CJP · PDBe 3CJP · UniProt Q97DY3

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