MolNFT v1 · #60104 · protein

Crystal structure of a prokaryotic domain of unknown function (DUF849) member (SPOA0042) from silicibacter pomeroyi dss-3 at 1.45 a resolution

3CHV · Prokaryotic domain of unknown function (DUF849) with a tim…: “Crystal structure of a prokaryotic domain of unknown function (DUF849) member (SPOA0042) from silicibacter…”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best…

PDB: 3CHV
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Prokaryotic domain of unknown function (DUF849) with a tim barrel fold
UniProt: Q5LLI5
Ligands: ZN, CL
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Prokaryotic domain of unknown function (DUF849) with a tim barrel fold	protein	279	39% helix, 18% strand	Q5LLI5

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	265	0.68	0.84	37	CL

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3CHV · CRYSTAL STRUCTURE OF a prokaryotic domain of unknown function (DUF849) member (SPOA0042)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LLI5
Elsewhere: RCSB PDB 3CHV · PDBe 3CHV · UniProt Q5LLI5

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