MolNFT v1 · #60082 · protein
The crystal structure of PDZ-fibronectin fusion protein
3CH8 · Fusion protein PDZ-fibronectin: “The crystal structure of PDZ-fibronectin fusion protein”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.31). MolNFT v1 #60082 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3CH8
- Type
- protein
- Length
- 198 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fusion protein PDZ-fibronectin; C-terminal octatpeptide from protein arvcf
- UniProt
- Q96RT1
- Ligands
- MG
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fusion protein PDZ-fibronectin | protein | 190 | 5% helix, 44% strand | Q96RT1 |
| P | C-terminal octatpeptide from protein arvcf | protein | 8 | 0% helix, 50% strand | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.31 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–P · 837 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96RT1
- Elsewhere: RCSB PDB 3CH8 · PDBe 3CH8 · UniProt Q96RT1
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