MolNFT v1 · #59926 · protein

X-ray structure of C-met with triazolopyridazine inhibitor.

3CCN · Hepatocyte growth factor receptor: “X-ray structure of C-met with triazolopyridazine inhibitor.”. X-ray diffraction, 1 ligand (LKG), 2 pockets (best druggability 0.59). MolNFT v1 #59926 on GenesisL1: 3D structure, binding sites and…

PDB: 3CCN
Type: protein
Length: 275 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hepatocyte growth factor receptor
EC: 2.7.10.1
UniProt: P08581
Ligands: LKG
Pockets: 2 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hepatocyte growth factor receptor (EC 2.7.10.1)	protein	275	41% helix, 16% strand	P08581

Ligands and binding sites

LKG · 4-[(6-phenyl[1,2,4]triazolo[4,3-b]pyridazin-3-yl)methyl]phenol · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	162	0.59	0.82	26	LKG
2	132	0.43	0.76	20	empty

Compared structures

3CCN · X-ray structure of c-Met with triazolopyridazine inhibitor. · the same entry in another collection · chain A against A, TM-score 1.00
P08581 · AlphaFold monomer V2.0 prediction for hepatocyte growth factor receptor (P08581) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08581
Elsewhere: RCSB PDB 3CCN · PDBe 3CCN · UniProt P08581

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