MolNFT v1 · #59791 · protein
Crystal structure of homoserine dehydrogenase from thermoplasma volcanium
3C8M: “Crystal structure of homoserine dehydrogenase from thermoplasma volcanium”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.63). MolNFT v1 #59791 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3C8M
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Homoserine dehydrogenase
- UniProt
- Q97BR6
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Homoserine dehydrogenase | protein | 324 | 42% helix, 21% strand | Q97BR6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 451 | 0.63 | 0.77 | 42 | SO4 |
| 2 | 54 | 0.26 | 0.73 | 18 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3C8M · Crystal structure of homoserine dehydrogenase from Thermoplasma volcanium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97BR6
- Elsewhere: RCSB PDB 3C8M · PDBe 3C8M · UniProt Q97BR6
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