MolNFT v1 · #59790 · protein
Crystal structure of a ftsz-like protein of unknown function (NPUN_R1471) from nostoc punctiforme pcc 73102 at 1.22 a resolution
3C8L: “Crystal structure of a ftsz-like protein of unknown function (NPUN_R1471) from nostoc punctiforme pcc 73102…”. X-ray diffraction, 2 ligands (SO4, CL), 5 pockets (best druggability 0.47). MolNFT v1 #59790 on GenesisL1: 3D structure…
- PDB
- 3C8L
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ftsz-like protein of unknown function
- Ligands
- SO4, CL
- Pockets
- 5 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ftsz-like protein of unknown function | protein | 121 | 26% helix, 40% strand | — |
| B | Ftsz-like protein of unknown function | protein | 119 | 26% helix, 37% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- IMD · Imidazole · additive · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.47 | 0.80 | 16 | IMD |
| 2 | 99 | 0.43 | 0.79 | 20 | empty |
| 3 | 80 | 0.40 | 0.79 | 19 | empty |
| 4 | 66 | 0.31 | 0.75 | 16 | empty |
| 5 | 50 | 0.29 | 0.76 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 909 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3C8L · Crystal structure of a ftsz-like protein of unknown function (npun_r1471) from nostoc… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3C8L · PDBe 3C8L
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