MolNFT v1 · #59714 · protein

The pseudo-atomic structure of dengue immature virus

3C6D · Polyprotein: “The pseudo-atomic structure of dengue immature virus”. Electron microscopy, 1 pocket (best druggability 0.28). MolNFT v1 #59714 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3C6D
Type: protein
Length: 1,413 residues
Chains: 6
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyprotein; Prm
UniProt: O11875, P14337
Pockets: 1 · best druggability 0.28

Structure

electron microscopy · 2 distinct chains · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Polyprotein	protein	390	0% helix, 0% strand	O11875
D, E, F	Prm	protein	81	0% helix, 0% strand	P14337

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.28	0.73	19	empty

Interfaces

5 interfaces between chains.

B–E · 161 Å² buried · 0 hydrogen bonds · protein-protein
C–F · 160 Å² buried · 0 hydrogen bonds · protein-protein
A–D · 159 Å² buried · 0 hydrogen bonds · protein-protein
E–F · 60 Å² buried · 0 hydrogen bonds · protein-protein
B–D · 52 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3C6D · The pseudo-atomic structure of dengue immature virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O11875
Every structure of UniProt P14337
Elsewhere: RCSB PDB 3C6D · PDBe 3C6D · UniProt O11875 · UniProt P14337

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