MolNFT v1 · #59550 · protein
Crystal structure of a putative oxidoreductase (ZP_00056571.1) from magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
3C1A: “Crystal structure of a putative oxidoreductase (ZP_00056571.1) from magnetospirillum magnetotacticum ms-1 at…”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #59550 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3C1A
- Type
- protein
- Length
- 614 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative oxidoreductase
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative oxidoreductase | protein | 307 | 33% helix, 32% strand | — |
Ligands and binding sites
- PG4 · Tetraethylene glycol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
- PGE · Triethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 612 | 0.71 | 0.79 | 56 | PGE |
| 2 | 583 | 0.69 | 0.78 | 55 | PG4, PEG |
| 3 | 174 | 0.54 | 0.79 | 33 | empty |
| 4 | 120 | 0.37 | 0.73 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 722 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3C1A · Crystal structure of a putative oxidoreductase (ZP_00056571.1) from Magnetospirillum… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3C1A · PDBe 3C1A
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.