MolNFT v1 · #59442 · protein
Crystal structure of cobalamin biosynthesis protein chig from agrobacterium tumefaciens str. C58
3BY5: “Crystal structure of cobalamin biosynthesis protein chig from agrobacterium tumefaciens str. C58”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.46). MolNFT v1 #59442 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3BY5
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cobalamin biosynthesis protein
- UniProt
- Q8UBQ4
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cobalamin biosynthesis protein | protein | 123 | 41% helix, 21% strand | Q8UBQ4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.46 | 0.81 | 23 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3BY5 · Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8UBQ4
- Elsewhere: RCSB PDB 3BY5 · PDBe 3BY5 · UniProt Q8UBQ4
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