MolNFT v1 · #5943 · protein
Beta-1,4-glycanase cex-CD
1EXP · Beta-1,4-D-glycanase cex-CD: “Beta-1,4-glycanase cex-CD”. X-ray diffraction, 2 ligands (G2F, BGC), 1 pocket (best druggability 0.38). MolNFT v1 #5943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1EXP
- Type
- protein
- Length
- 312 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-1,4-D-glycanase cex-CD
- EC
- 3.2.1.91, 3.2.1.8
- Ligands
- G2F, BGC
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-1,4-D-glycanase cex-CD (EC 3.2.1.91, 3.2.1.8) | protein | 312 | 46% helix, 20% strand | — |
Ligands and binding sites
- G2F · 2-deoxy-2-fluoro-alpha-D-glucopyranose · ligand · chains A
- BGC · beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.38 | 0.75 | 17 | G2F, BGC |
Modifications
Observed in the structure: 2 disulfide, 1 covalent (disulfide, covalent ligand).
Compared structures
- 1EXP · Beta-1,4-glycanase cex-CD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1EXP · PDBe 1EXP
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