MolNFT v1 · #59305 · protein
Crystal structure of a tRNA-binding protein from staphylococcus saprophyticus subsp. saprophyticus. northeast structural genomics consortium target SYR77
3BU2 · Putative tRNA-binding protein: “Crystal structure of a tRNA-binding protein from staphylococcus saprophyticus subsp. saprophyticus. northeast…”. X-ray diffraction, 12 pockets (best druggability 0.80). MolNFT v1 #59305 on GenesisL1…
- PDB
- 3BU2
- Type
- protein
- Length
- 780 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative tRNA-binding protein
- UniProt
- Q49YH3
- Pockets
- 12 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Putative tRNA-binding protein | protein | 195 | 8% helix, 39% strand | Q49YH3 |
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1093 | 0.80 | 0.81 | 131 | empty |
| 2 | 890 | 0.78 | 0.80 | 106 | empty |
| 3 | 58 | 0.63 | 0.93 | 24 | empty |
| 4 | 218 | 0.53 | 0.77 | 32 | empty |
| 5 | 158 | 0.48 | 0.77 | 25 | empty |
Interfaces
4 interfaces between chains.
- C–D · 2239 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 2185 Ų buried · 28 hydrogen bonds · protein-protein
- B–C · 995 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 985 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 modified (engineered).
Compared structures
- 3BU2 · Crystal structure of a tRNA-binding protein from Staphylococcus saprophyticus subsp.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q49YH3
- Elsewhere: RCSB PDB 3BU2 · PDBe 3BU2 · UniProt Q49YH3
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